Split Reads
Frontiers | MATCHCLIP: locate precise breakpoints for copy number variation using CIGAR string by matching soft clipped reads
The flow chart of TDNAscan pipeline. Types A and B of soft-clipped... | Download Scientific Diagram
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
Challenges and importance of mid-sized deletion identification for genomic medicine - SeqOne Genomics
ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly
Challenges and importance of mid-sized deletion identification for genomic medicine - SeqOne Genomics
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information | BMC Bioinformatics | Full Text
Structural Variation
Confluence Mobile - Integrated Genome Browser Help Pages
SoftSearch: Integration of Multiple Sequence Features to Identify Breakpoints of Structural Variations | PLOS ONE
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information | BMC Bioinformatics | Full Text
Hepatitis Delta Virus Genome RNA Synthesis Initiates at Position 1646 with a Nontemplated Guanosine | Journal of Virology
Soft Clipping: Explained + How To Use It
IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis | Scientific Reports
BAMClipper: removing primers from alignments to minimize false-negative mutations in amplicon next-generation sequencing | Scientific Reports
Confluence Mobile - Integrated Genome Browser Help Pages
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
Common sources of 5′end soft clipping and mismatches in 3′ end seq. (a)... | Download Scientific Diagram
A customized scaffolds approach for the detection and phasing of complex variants by next-generation sequencing | Scientific Reports
Soft Clipping: Explained + How To Use It
Alignment with STAR | Introduction to RNA-Seq using high-performance computing - ARCHIVED
